AIMD - RDF - PMF - pKa calculation?

Queries about input and output files, running specific calculations, etc.


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jinylee
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AIMD - RDF - PMF - pKa calculation?

#1 Post by jinylee » Wed Oct 10, 2018 10:54 am

I think I'm in a deep mis-understanding now.
As a result of NVT calculations, we can easily draw RDF(radial distribution function),
PMF(potential of mean-force) = -kB(boltzman-constant)*T*ln(RDF). Is this formula true?
If it is, easily find PMF with a simple operation,
and then, can I think of the difference between the two energy valleys as Gibbs free energy difference(ΔG)?

When Gibbs free energy is approximated by Helmholtz energy, ΔA, can I easily get the pKa through pKa = ΔG/2.303RT ?
If my assumptions are correct, why are you doing Umbrella sampling and special(difficulty) processing?

support_vasp
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Re: AIMD - RDF - PMF - pKa calculation?

#2 Post by support_vasp » Wed Sep 11, 2024 3:39 pm

Hi,

We're sorry that we didn’t answer your question. This does not live up to the quality of support that we aim to provide. The team has since expanded. If we can still help with your problem, please ask again in a new post, linking to this one, and we will answer as quickly as possible.

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